Date Number Title
February 3, 2021, 1:21 PM PST 1086 [IA] Capture antigen positive as probable cases
February 3, 2021, 1:21 PM PST 1086 [IA] Capture antigen positive as probable cases
August 28, 2020, 1:30 PM PDT 800 [IA] Total PCR tests (people) on 8/27 accidentally included antigen tests
July 30, 2020, 6:45 AM PDT 700 [IA] Antibody test reporting in people
July 10, 2020, 7:32 AM PDT 596 [IA] PCL Case Historicals
June 26, 2020, 7:00 AM PDT 545 [IA] PCL Historicals and WS2
March 11, 2020, 6:23 AM PDT 1 IA: Need live-browser capture

#1086: [IA] Capture antigen positive as probable cases

Issue number 1086

jaclyde opened this issue on February 3, 2021, 1:21 PM PST

Labels Data quality stale

Open in Github

State: Iowa

Issue: Iowa is treating anitgen positive individuals as probable cases, so we are moving the time series to the Probable case metric

Comments

stale[bot] commented on February 18, 2021, 7:48 PM PST
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This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions!

stale[bot] commented on February 28, 2021, 8:30 PM PST
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This issue has been closed because it was stale for 15 days, and there was no further activity on it for 10 days. You can feel free to re-open it if the issue is important, and label it as "not stale."

#1086: [IA] Capture antigen positive as probable cases

Issue number 1086

jaclyde opened this issue on February 3, 2021, 1:21 PM PST

Labels Data quality stale

Open in Github

State: Iowa

Issue: Iowa is treating anitgen positive individuals as probable cases, so we are moving the time series to the Probable case metric

Comments

stale[bot] commented on February 18, 2021, 7:48 PM PST
Open in Github

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions!

stale[bot] commented on February 28, 2021, 8:30 PM PST
Open in Github

This issue has been closed because it was stale for 15 days, and there was no further activity on it for 10 days. You can feel free to re-open it if the issue is important, and label it as "not stale."

#800: [IA] Total PCR tests (people) on 8/27 accidentally included antigen tests

Issue number 800

qpmnguyen opened this issue on August 28, 2020, 1:30 PM PDT

Labels Data quality not stale

Open in Github

State or US: IA

Describe the problem There was a mistake on 8/27 where the testing number lumping antigen was inputted into of total tests (people) field in IA

Link to data source We have no viable screenshot to backfill 😢

Comments

muamichali commented on April 6, 2021, 2:18 PM PDT
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We should carry over the previous day's number.

#700: [IA] Antibody test reporting in people

Issue number 700

brianskli opened this issue on July 30, 2020, 6:45 AM PDT

Labels Historical Data PCL/SVP Historicals not stale

Open in Github

State or US: Iowa

Describe the problem IA's use of "Individuals" for antibody test counts implies that they report in people, not specimens, tested. States Daily needs to be updated accordingly.

Link to data source https://coronavirus.iowa.gov/pages/serology-testing

Comments

brianskli commented on July 30, 2020, 6:47 AM PDT
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Our need to transfer to people antibody reporting was verified.

Action items:

1/4: WS2 private note left Before" Screen Shot 2020-07-30 at 9 41 46 AM After: Screen Shot 2020-07-30 at 9 42 10 AM

2/4: WS2 source notes changed Before: Screen Shot 2020-07-30 at 9 42 34 AM After: Screen Shot 2020-07-30 at 9 42 47 AM

3/4: Data in States Daily copied to correct columns Before: Screen Shot 2020-07-30 at 9 43 54 AM After: Screen Shot 2020-07-30 at 9 44 10 AM

4/4: WS2 pre-filled

#596: [IA] PCL Case Historicals

Issue number 596

pscsharon opened this issue on July 10, 2020, 7:32 AM PDT

Labels Backfill Missing Data PCL/SVP Historicals

Open in Github

State: Iowa

Description: CTP started capturing Positive Cases (PCR) / positiveTestsViral on 4/29. We should back-fill the values before that date in Iowa. It is unlikely that IA used lumped values and then went to lab-confirmed only, given the consistent time-series for Positives. The wording before the dashboard changed also is in line with our definition for Lab Confirmed Only.

The state only reports cases confirmed by viral test. State must explicitly use the word "confirmed", inviting interpretation by CSTE case definition, or specify they are using PCR/viral tests, to be labelled as lab-confirmed. Positives should therefore be copied into Positive Cases (PCR).

Source: Screenshots from Iowa's websites & previous capture by CTP of the same information

Comments

jesseandersonumd commented on July 13, 2020, 7:46 AM PDT
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UPDATE: 7/13

While backfiling, we came across a graph on the website that reports confirmed cases by day [https://coronavirus.iowa.gov/pages/case-counts]. Here is the graph:

Screen Shot 2020-07-13 at 9 32 39 AM

This graph is hoverable and the data can be automatically fetched from ArcGIS layers.

brianskli commented on July 23, 2020, 6:51 AM PDT
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Using IA's data definition, it was confirmed that IA reports in lab-confirmed cases. Values from Positives were then copied into Positive Cases (PCR) in States Daily.

Before: Screen Shot 2020-07-23 at 9 37 14 AM After: Screen Shot 2020-07-23 at 9 39 52 AM

#545: [IA] PCL Historicals and WS2

Issue number 545

pscsharon opened this issue on June 26, 2020, 7:00 AM PDT

Labels PCL/SVP Historicals

Open in Github

Death values are historically recorded in both the "Deaths" and "Deaths (Confirmed)" columns for IA. However, IA’s death values are unclear about what they represent, so they should only be recorded in the main "Deaths" field.

Comments

pscsharon commented on June 26, 2020, 7:02 AM PDT
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Updated tooltip from "Dashboard" to "no data" as well as added process note.

Screen Shot 2020-06-26 at 7 02 03 AM
muamichali commented on June 29, 2020, 7:40 AM PDT
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BEFORE image

AFTER image

#1: IA: Need live-browser capture

Issue number 1

joshuaellinger opened this issue on March 11, 2020, 6:23 AM PDT

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IA scraping fails due to a security project (Incapsula). It breaks for any python requests based approach.

The link is https://idph.iowa.gov/Emerging-Health-Issues/Novel-Coronavirus

Can someone setup a chromium proxy that deals with this?

  1. Setup an endpoint like http://mysite.org/proxy?state=IA
  2. when you get a request, spawn up a captive browser using something like Nightwatch or Selentium(sp?)
  3. issue the request to the link above
  4. return the HTML.

Comments

joshuaellinger commented on March 13, 2020, 10:36 AM PDT
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Iowa is hopeless -- we'll need to check it manually.

joshuaellinger commented on March 13, 2020, 10:36 AM PDT
Open in Github

Iowa is hopeless -- we'll need to check it manually.